Package: enrichR 3.2
Wajid Jawaid
enrichR: Provides an R Interface to 'Enrichr'
Provides an R interface to all 'Enrichr' databases. 'Enrichr' is a web-based tool for analysing gene sets and returns any enrichment of common annotated biological features. Quoting from their website 'Enrichment analysis is a computational method for inferring knowledge about an input gene set by comparing it to annotated gene sets representing prior biological knowledge.' See <https://maayanlab.cloud/Enrichr/> for further details.
Authors:
enrichR_3.2.tar.gz
enrichR_3.2.zip(r-4.7)enrichR_3.2.zip(r-4.6)enrichR_3.2.zip(r-4.5)
enrichR_3.2.tgz(r-4.6-any)enrichR_3.2.tgz(r-4.5-any)
enrichR_3.2.tar.gz(r-4.7-any)enrichR_3.2.tar.gz(r-4.6-any)
enrichR_3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
enrichR/json (API)
NEWS
| # Install 'enrichR' in R: |
| install.packages('enrichR', repos = c('https://cogdisreslab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cogdisreslab/enrichr/issues
- background - Example background genes
- genes790 - 790 gene symbols
- input - Example input genes
Last updated from:a7bc48f0d6. Checks:8 ERROR, 1 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 139 | ||
| source / vignettes | ERROR | 168 | ||
| linux-release-x86_64 | ERROR | 128 | ||
| macos-release-arm64 | ERROR | 119 | ||
| macos-oldrel-arm64 | ERROR | 126 | ||
| windows-devel | ERROR | 105 | ||
| windows-release | ERROR | 95 | ||
| windows-oldrel | ERROR | 73 | ||
| wasm-release | OK | 113 |
Exports:enrichrlistEnrichrDbslistEnrichrSitesplotEnrichprintEnrichsetEnrichrSite
Dependencies:askpassclicpp11curlfarverggplot2gluegtablehttrisobandjsonlitelabelinglifecyclemimeopensslR6RColorBrewerrjsonrlangS7scalessysvctrsviridisLitewithrWriteXLS
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| onLoad hook to setup package options | .onAttach |
| Example background genes | background |
| Gene enrichment using Enrichr | enrichr |
| 790 gene symbols | genes790 |
| Helper function for HTTP methods GET and POST | getEnrichr |
| Example input genes | input |
| Look up available databases on Enrichr | listEnrichrDbs |
| List Enrichr Websites | listEnrichrSites |
| plotEnrich | plotEnrich |
| printEnrich | printEnrich |
| Set Enrichr Website | setEnrichrSite |