Package: drugfindR 0.99.1017

Ali Sajid Imami

drugfindR: Investigate iLINCS for candidate repurposable drugs

This package provides a convenient way to access the LINCS Signatures available in the iLINCS database. These signatures include Consensus Gene Knockdown Signatures, Gene Overexpression signatures and Chemical Perturbagen Signatures. It also provides a way to enter your own transcriptomic signatures and identify concordant and discordant signatures in the LINCS database.

Authors:Ali Sajid Imami [aut, cre], Smita Sahay [aut], Justin Fortune Creeden [aut]

drugfindR_0.99.1017.tar.gz
drugfindR_0.99.1017.zip(r-4.5)drugfindR_0.99.1017.zip(r-4.4)
drugfindR_0.99.1017.tgz(r-4.4-any)
drugfindR_0.99.1017.tar.gz(r-4.5-noble)drugfindR_0.99.1017.tar.gz(r-4.4-noble)
drugfindR_0.99.1017.tgz(r-4.4-emscripten)
drugfindR.pdf |drugfindR.html✨
drugfindR/json (API)
NEWS

# Install 'drugfindR' in R:
install.packages('drugfindR', repos = c('https://cogdisreslab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/cogdisreslab/drugfindr/issues

On CRAN:

lincsilincsdrug repurposingdrug discoverytranscriptomicsgene expressiongene knockdowngene overexpressionchemical perturbagendrugfindrbioinformaticsbioinformatics-pipeline

6.06 score 8 stars 145 scripts 7 exports 38 dependencies

Last updated 5 days agofrom:4efdebf1d2. Checks:OK: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 16 2024
R-4.5-winOKNov 16 2024
R-4.5-linuxOKNov 16 2024
R-4.4-winOKNov 16 2024
R-4.4-macOKNov 16 2024

Exports:consensusConcordantsfilterSignaturegetConcordantsgetSignatureinvestigateSignatureinvestigateTargetprepareSignature

Dependencies:askpassBiocGenericsbitbit64clicliprcpp11crayoncurldplyrfansigenericsgluehmshttr2lifecyclemagrittropensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsreadrrlangS4Vectorsstringistringrsystibbletidyselecttzdbutf8vctrsvroomwithr

drugfindR

Rendered fromdrugfindR.Rmdusingknitr::rmarkdownon Nov 16 2024.

Last update: 2024-06-17
Started: 2023-01-29