Package: drugfindR 0.99.1017

Ali Sajid Imami

drugfindR: Investigate iLINCS for candidate repurposable drugs

This package provides a convenient way to access the LINCS Signatures available in the iLINCS database. These signatures include Consensus Gene Knockdown Signatures, Gene Overexpression signatures and Chemical Perturbagen Signatures. It also provides a way to enter your own transcriptomic signatures and identify concordant and discordant signatures in the LINCS database.

Authors:Ali Sajid Imami [aut, cre], Smita Sahay [aut], Justin Fortune Creeden [aut]

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drugfindR.pdf |drugfindR.html✨
drugfindR/json (API)
NEWS

# Install 'drugfindR' in R:
install.packages('drugfindR', repos = c('https://cogdisreslab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/cogdisreslab/drugfindr/issues

On CRAN:

lincsilincsdrug repurposingdrug discoverytranscriptomicsgene expressiongene knockdowngene overexpressionchemical perturbagendrugfindrbioinformaticsbioinformatics-pipeline

6.13 score 8 stars 145 scripts 7 exports 38 dependencies

Last updated 3 days agofrom:36ddde52f6. Checks:OK: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 23 2024
R-4.5-winOKDec 23 2024
R-4.5-linuxOKDec 23 2024
R-4.4-winOKDec 23 2024
R-4.4-macOKDec 23 2024

Exports:consensusConcordantsfilterSignaturegetConcordantsgetSignatureinvestigateSignatureinvestigateTargetprepareSignature

Dependencies:askpassBiocGenericsbitbit64clicliprcpp11crayoncurldplyrfansigenericsgluehmshttr2lifecyclemagrittropensslpillarpkgconfigprettyunitsprogresspurrrR6rappdirsreadrrlangS4Vectorsstringistringrsystibbletidyselecttzdbutf8vctrsvroomwithr

drugfindR

Rendered fromdrugfindR.Rmdusingknitr::rmarkdownon Dec 23 2024.

Last update: 2024-06-17
Started: 2023-01-29