Package: BioPathNet
Type: Package
Title: BioPathNet: Three Pod Analysis System
Version: 0.2.0
Authors@R: c(
  person(
    given = c("Ali", "Sajid"),
    family = "Imami",
    role = c("aut", "cre"),
    email = "Ali.Sajid.Imami@gmail.com",
    comment = c(ORCID = "0000-0003-3684-3539")
  ),
  person(
    given = "Khaled",
    family = "Alganem",
    role = c("aut"),
    email = "Khaled.Alganem@rockets.utoledo.edu",
    comment = c(ORCID = "0000-0003-3234-7669")
  ),
  person(
    given = "Xiaolu",
    family = "Zhang",
    role = c("aut"),
    email = "Xiaolu.Zhang@utoledo.edu",
    comment = c(ORCID = "0000-0001-5595-7270")
  ),
  person(
    given = c("Marissa", "Ann"),
    family = "Smail",
    role = c("aut"),
    email = "smailma@mail.uc.edu",
    comment = c(ORCID = "0000-0002-9743-3771")
  ))
Maintainer: Ali Sajid Imami <Ali.Sajid.Imami@gmail.com>
Description: This package aims to provide a simple interface to perform
        the Three Pod Analysis of RNASeq dataaset. In addition, this
        also provides utility functions to perform the individual
        components.
License: GPL-3
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Suggests: testthat
RoxygenNote: 7.2.3
Imports: magrittr, tibble, readr, stringr, purrr, methods, fgsea,
        enrichR, rlang, stats, dplyr, tidyr
Collate: 'classes.R' 'BPNList.R' 'EnrichRResult.R' 'GSEAResult.R'
        'LEResult.R' 'S4methods.R' 'data.R' 'do_enrichr_pod.R'
        'do_gsea_pod.R' 'do_leading_pod.R' 'get_revigo_output.R'
        'prepare_data.R'
Depends: R (>= 2.10)
Repository: https://cogdisreslab.r-universe.dev
Date/Publication: 2025-11-04 15:32:27 UTC
RemoteUrl: https://github.com/CogDisResLab/BioPathNet
RemoteRef: HEAD
RemoteSha: 05ee111d8cf7227bb26a761f3394a2cae38a49af
NeedsCompilation: no
Packaged: 2026-07-02 09:52:54 UTC; root
Author: Ali Sajid Imami [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3684-3539>),
  Khaled Alganem [aut] (ORCID: <https://orcid.org/0000-0003-3234-7669>),
  Xiaolu Zhang [aut] (ORCID: <https://orcid.org/0000-0001-5595-7270>),
  Marissa Ann Smail [aut] (ORCID:
    <https://orcid.org/0000-0002-9743-3771>)